PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1953s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 258aa    MW: 29905.6 Da    PI: 8.4426
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1953s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.8e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd ll d+++++G  +W+  ++  g+ R++k+c++rw +yl
  Aqcoe1953s0001.1.p 14 RGAWTPEEDRLLSDYIARYGLWNWRELPKFAGLSRCGKSCRLRWMNYL 61
                        89******************99************************97 PP

2Myb_DNA-binding57.14.1e-1867112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ T eE++l+++++++lG++ W++Ia  ++ gRt++++k++w+++l
  Aqcoe1953s0001.1.p  67 RGNYTREEEKLIINLHEKLGNR-WSAIAMNLP-GRTDNEIKNHWHTHL 112
                         899*******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.751961IPR017930Myb domain
SuperFamilySSF466891.73E-2911108IPR009057Homeodomain-like
SMARTSM007173.2E-121363IPR001005SANT/Myb domain
PfamPF002495.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-231568IPR009057Homeodomain-like
CDDcd001671.78E-91661No hitNo description
PROSITE profilePS5129426.12862116IPR017930Myb domain
SMARTSM007173.1E-1766114IPR001005SANT/Myb domain
PfamPF002491.9E-1667112IPR001005SANT/Myb domain
CDDcd001674.70E-1369112No hitNo description
Gene3DG3DSA:1.10.10.609.7E-2569115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRSSICPKT GLKRGAWTPE EDRLLSDYIA RYGLWNWREL PKFAGLSRCG KSCRLRWMNY  60
LRPNIKRGNY TREEEKLIIN LHEKLGNRWS AIAMNLPGRT DNEIKNHWHT HLIKKRAKSN  120
TTSKETKCKP AVGCETHRRK ESVPSSFLPD TLRPLILESS SLVLPVSPEK SRDLSPSTSI  180
DKVVNHQMTD RSPTSSETLT EFNGNFWTDD PFLEDDLYRP ENTTSDYWTD PSHLYANATY  240
PYDLYDGYDM DIFFNYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047495.12e-69PREDICTED: myb-related protein Myb4-like
RefseqXP_002325681.12e-69hypothetical protein POPTR_0019s14140g
TrEMBLB9INU32e-69B9INU3_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14140.17e-69(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-60myb domain protein 14